PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_04108
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 304aa    MW: 31482.6 Da    PI: 9.915
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_04108genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-09107132227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+lC+ +     Ck+Gd+C+FaHg+
  PEQU_04108 107 KTRLCNKYNTPEGCKFGDKCHFAHGE 132
                 8***********************96 PP

2zf-CCCH30.56.2e-10271295126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+ C++f + G C +G+rC+FaHg
  PEQU_04108 271 FKTKMCDNFTK-GSCTFGERCHFAHG 295
                 69*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.83966IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0893967IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-54064IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-74164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-14103137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948105133IPR000571Zinc finger, CCCH-type
SMARTSM003560.021105132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-8106136IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-6107132IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.86E-15166244IPR004088K Homology domain, type 1
SMARTSM003228.7E-12172242IPR004087K Homology domain
PROSITE profilePS5008414.236173237IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-15173241IPR004088K Homology domain, type 1
PfamPF000134.7E-11175238IPR004088K Homology domain, type 1
CDDcd001052.75E-13177237No hitNo description
Gene3DG3DSA:4.10.1000.101.7E-15269301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-8270300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.798270297IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-6270296IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6271295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MYANDAGRKR GRPDAVIGNG TFSGFKRSKE TESNQHGLGS KSKPCTKFFS TAGCPFGEGC  60
HFLHFVPGGY NTVAQITNGG ITAFTAASRN TIAPSPISDG PPANAAKTRL CNKYNTPEGC  120
KFGDKCHFAH GERELNRPLH SAPMAPPMGG RFGSRLEPPP PAGLGAAASF GASATAKISV  180
DASLAGAIIG KGGVNTKQIC RLTGARLFIR EHESDPNLRN IELEGTFDQI KQATGLVREL  240
IVNISTSAAP APVKAAAGLG AGGGGGSGSN FKTKMCDNFT KGSCTFGERC HFAHGAAELR  300
KATA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805470.11e-151PREDICTED: zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R01e-118C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM0TJ901e-140M0TJ90_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P20530_0011e-140(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-62C3H family protein