PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_04108
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 304aa    MW: 31482.6 Da    PI: 9.915
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_04108genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-09107132227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+lC+ +     Ck+Gd+C+FaHg+
  PEQU_04108 107 KTRLCNKYNTPEGCKFGDKCHFAHGE 132
                 8***********************96 PP

2zf-CCCH30.56.2e-10271295126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+ C++f + G C +G+rC+FaHg
  PEQU_04108 271 FKTKMCDNFTK-GSCTFGERCHFAHG 295
                 69*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.83966IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0893967IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-54064IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-74164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-14103137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948105133IPR000571Zinc finger, CCCH-type
SMARTSM003560.021105132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-8106136IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-6107132IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.86E-15166244IPR004088K Homology domain, type 1
SMARTSM003228.7E-12172242IPR004087K Homology domain
PROSITE profilePS5008414.236173237IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-15173241IPR004088K Homology domain, type 1
PfamPF000134.7E-11175238IPR004088K Homology domain, type 1
CDDcd001052.75E-13177237No hitNo description
Gene3DG3DSA:4.10.1000.10